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into a peptide chain. They comprise a central (‘α’) carbon, with characteristic chemical groups attached to its four valencies: an amino (NH2) group, a carboxyl (COOH) group, a hydrogen atom, and finally a variable (‘R’) group which defines the actual amino acid species (for example, if R = a methyl group, CH3, then the resulting amino acid is alanine), illustrated in Figure 1.11. At acid pH, the amino group is ionised (NH3+) whilst at alkaline pH the carboxyl group is ionised (COO); at physiological pH (7.4) the amino acid is present as a Zwitter ion (both amino and carboxyl groups ionised). Proteins are assembled by adjacent amino acids forming a peptide bond between the carboxyl group of one and the amino group of another. This always leaves a terminal amino group and a terminal carboxyl group on any protein, hence all proteins act as buffers, able to gain or lose a proton. The carbon ‘backbone’ of individual amino acids is relatively energy rich and can be oxidised to yield energy once the amino group has been removed.

Figure shows the structure of an amino acid. At physiological pH, that is 7.4, the carboxyl group is ionised to COO minus and the amino group to NH3 plus. The nature of the ‘R’ group, or side-chain, defines the particular amino acid: the 20 different amino acids which constitute proteins each have a different R group.

      1.3 General overview of metabolism

      1.3.1 Human metabolic pathways

      The body requires energy for chemical and mechanical work in order to maintain homeostasis; functions include maintenance of ionic gradients, transport, biosynthesis, heat generation and muscle contraction. Metabolism describes the series of biochemical reactions which provide the body with the energy it requires to maintain these biological functions. This energy must ultimately be derived from food, and is sourced from three groups of energy-rich substrates: carbohydrates, lipids, and amino acids (proteins). Multiple groups are utilised because they all have chemical and thermodynamic advantages and disadvantages, and together they provide energy under widely varying conditions and demands. All three nutrient groups exist in large, energy-rich macromolecular storage forms, discussed further in Chapter 7; they are all related to daily fluxes of energy substrates in the body.

Figure shows a diagram describing catabolism and anabolism. A box titled Energy-rich substrates, with bullet points carbohydrates, Lipids, and Proteins, appears on top. From this box, an arrow labelled Catabolism points to another box titled Energy-poor end-products, with bullet points CO2, H2O, and NH3. Another set of two boxes appear to the right one below the other. The top box is titled Complex molecules, with bullet points Polysaccharides, Lipids, Nucleic acids, and Proteins and the bottom one is titled precursor molecules, with bullet points Amino acids, Hexoses, and Fatty acids. There is an arrow pointing from the bottom box to the top one labelled anabolism.

      The terms anabolism and catabolism are useful but can be confusing and have frequently been misused. They should be used to refer to whole-body energy strategy:

      Hence, in the postprandial state, after a meal, we are entering an anabolic state, whereas in the post-absorptive state, following absorption and disposition of the meal, we are entering a catabolic state. This is signalled by insulin.

      Classic physiological catabolic states include fasting/starvation (decreased energy intake) and exercise (increased energy expenditure). Diabetes mellitus is an example of a pathological catabolic state (failure of insulin signalling).

      If the terms are applied to individual metabolic pathways, or even individual steps, confusion can arise. For example glycolysis may be thought of as ‘catabolic’ in exercising muscle, breaking down glucose to provide energy for contraction (net energy mobilisation), but ‘anabolic’ in liver in the well-fed postprandial state, when absorbed glucose is converted to pyruvate, but the resulting acetyl-CoA undergoes lipogenesis to fat for energy storage. When analysing metabolism it is important to consider the whole body (anabolic? catabolic?) as well as individual tissues, as these all have specialised metabolic profiles and functions (see Chapter 5).

      The body is subject to many catabolic signals (e.g. ‘stress hormones,’ catecholamines, glucocorticoids, glucagon etc., but one major anabolic signal – insulin. Insulin inhibits catabolism, and therefore when it declines, unopposed catabolism results. This is one rea- son why insulin is such a crucial signal, and diabetes such an important disease.

      The rate of energy production is measured under basal conditions (no voluntary muscle contraction; thermoneutrality) – ‘basal metabolic rate’ (BMR), and is affected by many factors, including muscle contraction, food ingestion, size, gender, age, temperature, sepsis, and several hormones, including thyroid hormones and catecholamines. The metabolic rate can be estimated by measuring the oxygen consumption (VO2; indirect calorimetry). For carbohydrate metabolism the rate of CO2 production (VCO2) equals VO2 (C6H12O6 + 6O2 → 6CO2 + 6H2O) and the ratio VCO2/VO2, termed the respiratory quotient (RQ), is 6/6 = 1. For lipid oxidation, however, this is not true (e.g. tripalmitin: 2C51H98O6 + 145O2 → 102CO2 + 98H2O; RQ = 102/145 = 0.70) and measurement of RQ can provide useful information on substrate selection and utilisation. This will be discussed further in Chapter 11 (Box 11.2).

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