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M.J. and Moore, B.R. (2003). Toward an integrative historical biogeography. Integr. Comp. Biol., 43, 261–270.

      Donoghue, M.J. and Smith, S.A. (2004). Patterns in the assembly of temperate forests around the Northern Hemisphere. Philos. Trans. R. Soc. London Biol., 359, 1633–1644.

      Faith, D.P. and Cranston, P.S. (1991). Could a cladogram this short have arisen by chance alone? On permutation tests for cladisticand permutation structure. Cladistics, 7, 1–28.

      Faria, N.R., Suchard, M.A., Rambaut, A., Streicker, D.G., Lemey, P. (2013). Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Phil. Trans. R. Soc. B., 368, 20120196.

      Fitzjohn, R.G. (2012). Diversitree: Comparative phylogenetic analyses of diversification in R. Methods Eco. Evol., 3(6), 1084–1092.

      Fonseca, E.M., Colli, G.R., Werneck, F.P., Carstens, B.C. (2020). Phylogeographic model selection using convolutional neural networks. bioRxiv. doi: https://doi.org/10.1101/2020.09.11.291856.

Goldberg, E. and Igic, B. (2012). Tempo and mode in plant breeding system evolution. Evolution, 66, 3701–3709.

      Goldberg, E.E., Lancaster, L.T., Ree, R.H. (2011). Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Syst. Biol., 60, 451–465.

      Goodman, S. (1999). Toward evidence-based medical statistics: The Bayes factor. Ann. Intern. Med., 130, 1005–1013.

      Gotelli, N.J., Anderson, M.J., Arita, H.T., Chao, A., Colwell, R.K., Connolly, S.R., Currie, D.J., Dunn, R.R., Graves, G.R., Green, J.L., Grytnes, J.-A., Jiang, Y.-H., Jetz, W., Lyons, S.K., McCain, C.M., Magurran, A.E., Rahbek, C., Rangel, T.F.L.V.B., Soberón, J., Webb, C.O., Willig, M.R. (2009). Patterns and causes of species richness: A general simulation model for macroecology. Ecol. Lett, 12, 873–886.

      Harris, A.J. and Xiang, Q.Y. (2009). Estimating ancestral distributions of lineages with uncertain sister groups: A statistical approach to dispersal vicariance analysis and a case using Aesculus L. (Sapindaceae) including fossils. J. Syst. Evol., 47, 349–368.

      Hickerson, M.J., Stahl, E., Takebayashi, N. (2007). msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation. BMC Bioinform., 8, 268.

      Huelsenbeck, J.P., Rannala, B., Masly, J.P. (2000). Accommodating phylogenetic uncertainty in evolutionary studies. Science, 288, 2349–2350.

      Humphries, C.J. and Parenti, L. (1999). Cladistic Biogeography, 2nd edition. Oxford University Press, New York.

      Klopfstein, S., Vilhelmsen, L., Ronquist, F. (2015). Nonstationary Markov model detects directional evolution in hymenopteran morphology. Syst. Biol., 64, 1089–1103.

      Kodandaramaiah, U. (2010). Use of dispersal-vicariance analysis in biogeography – A critique. J. Biogeogr., 37, 3–11.

      Landis, M.J. (2017). Biogeographic dating of speciation times using paleogeographically informed processes. Syst. Biol., 66, 128–144.

      Landis, M.J., Matzke, N.J., Moore, B.R., Huelsenbeck, J.P. (2013). Bayesian analysis of biogeography when the number of areas is large. Syst. Biol., 62, 789–804.

      Lemey, P., Rambaut, A., Drummond, A.J., Suchard, M.A. (2009). Bayesian phylogeography finds its roots. PLoS Comput. Biol., 5.

      Lemey, P., Rambaut, A., Welch, J.J., Suchard, M.A. (2010). Phylogeography takes a relaxed random walk in continuous space and time. Mol. Biol. Evol., 27, 1877–1885.

      Lieberman, B.S. (2003). Paleobiogeography: The relevance of fossils to biogeography. Annu. Rev. Ecol. Evol. Syst., 34, 51–69.

      Maddison, W.P., Midford, P.E., Otto, S.P. (2007). Estimating a binary character’s effect on speciation and extinction. Syst. Biol., 56, 701–710.

Mairal, M., Pokorny, L., Aldasoro, J.J., Alarcón, M., Sanmartín, I. (2015). Ancient vicariance and climate-driven extinction explain continental-wide disjunctions in Africa: The case of the rand flora genus Canarina (Campanulaceae). Mol. Ecol., 24, 1335–1354.

      Marshall, C.J. and Liebherr, J.K. (2000). Cladistic biogeography of the Mexican transition zone. J. Biogeogr., 27, 203–216.

      Massana, K.A., Beaulieu, J.M., Matzke, N.J., O’Meara, B.C. (2015). Non-null effects of the null range in biogeographic models: Exploring parameter estimation in the DEC model. bioRxiv, 026914.

      Mastretta-Yanes, A., Moreno-Letelier, A., Pinñero, D., Jorgensen, T.H., Emerson, B.C. (2015). Biodiversity in the Mexican highlands and the interaction of geology, geography and climate within the Trans-Mexican Volcanic Belt. J. Biogeogr., 42, 1586–1600.

      Matzke, N.J. (2014). Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Syst Biol., 63, 951–970.

      McRae, B.H., Dickson, B.G., Keitt, T.H., Shah, V.B. (2008). Using circuit theory to model connectivity in ecology, evolution, and conservation. Ecology, 89, 2712–2724.

      Meseguer, A.S., Lobo, J.M., Ree, R., Beerling, D.J., Sanmartín, I. (2015). Integrating fossils, phylogenies, and niche models into biogeography to reveal ancient evolutionary history: The case of Hypericum (Hypericaceae). Syst. Biol., 64, 215–232.

      Moore, B.R. and Donoghue, M.J. (2007). Correlates of diversification in the plant clade Dipsacales: Geographic movement and evolutionary innovations. Am. Nat., 170, 28–55.

      Muller, N.T., Rasmussen, D.A., Stadler, T. (2017). The structured coalescent and its approximations. Mol. Biol. Evol., 34, 2970–2981.

      Nelson, G. and Platnick, N.I. (1981). Systematics and Biogeography: Cladistics and Vicariance. Columbia University Press, New York, NY.

      Nylander, J.A.A., Olsson, U., Alstrom, P., Sanmartín, I. (2008). Accounting for phylogenetic uncertainty in biogeography: A Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Syst Biol., 57, 257–68.

      Overcast, I., Emerson, B.C., Hickerson, M.J. (2019). An integrated model of population genetics and community ecology. J. Biogeogr., 46, 816–829.

      Page, R.D.M. (1993). Genes, organisms, and areas: The problem of multiple lineages. Syst. Biol., 42, 77–84.

      Pagel, M., Meade, A., Barker, D. (2004). Bayesian estimation of ancestral character states on phylogenies. Syst. Biol., 53, 673–684.

      Prieto-Márquez, A. (2010). Global historical biogeography of hadrosaurid dinosaurs. Zool. J. Linn. Soc., 159, 503–525.

      Quinn, S., McFrederick, D., Taylor, R. (2013). Evolutionary history of nematodes associated with sweat bees. Mol. Phylogen. Evol., 66, 847–856.

Quintero, I. and Landis, M.J. (2020). Interdependent phenotypic and biogeographic evolution driven by biotic interactions. Syst. Biol., 69, 739–755.

      Rangel, T.F., Edwards, N.E., Holden, P.B., Diniz-Filho, J.A.F., Gosling, W.D., Coelho, M.T.P., Cassemiro, F.A.S., Rahbek, C., Colwell, R.K. (2018). Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves. Science, 361, eaar5452.

      Ree, R.H. and Sanmartín, I. (2009). Prospects and challenges for parametric models in historical biogeographical inference. J. Biogeogr., 36, 1211–1220.

      Ree, R.H. and Sanmartín, I. (2018). Conceptual and statistical problems with the DEC+J model of founder-event speciation and its comparison with DEC via model selection. J. Biogeogr., 45, 741–749.

      Ree, R.H. and Smith S.A. (2008). Maximum likelihood inference of geographic range evolution by dispersal, local extinction,

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