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Data Analytics in Bioinformatics. Группа авторов
Читать онлайн.Название Data Analytics in Bioinformatics
Год выпуска 0
isbn 9781119785606
Автор произведения Группа авторов
Жанр Программы
Издательство John Wiley & Sons Limited
Where,
B is known as dependent variable
A or Aj∈k are independent variable
n is an intercept
q or qj∈k are slope variables
i is regression residual
k is any natural number.
For easy understanding, a case study on heart disease is discussed below. In this case study, with the help of the regression approach, a prediction was done whether a person has heart disease or not. Here, the dependent variable is the heart disease and the independent variables are cholesterol levels, blood pressure, etc. After analyzing the data, it was found that the patient has a problem in his heart which is presented below on a 2D plane in Figure 1.9.
The steps required for regression analysis are [50]:
Select the dependent & independent variables.
Explore the co-relation matrix along with the scatter plot.
Perform the Linear or Multiple Regression Operation.
Accord with the outliers along with the multi-collinearity.
Perform the t-test.
Handle the insignificant variables.
Figure 1.9 Regression.
Figure 1.10 Cholesterol line fit plot.
The Regression operation performed on the heart disease dataset concerning the age and cholesterol and got the following results as shown in Figure 1.10.
In the above figure, a line fit plot is mentioned that depicts the line of best fit. This line of best fit is known as the trend line. This trend line is based on a linear equation and try to present the standard cholesterol level of a general human w.r.t. the age. The plot has two axes that include a vertical axis depicting the age and the horizontal axis depicting the cholesterol values. The trend line could be linear, polynomial, or exponential as discussed in Refs. [51–53]. In the process of regression analysis on the heart disease dataset, the following numerical interpretation is obtained and presented in Table 1.1.
Where,
Multiple R (Co-relation Coefficient): It depicts the strength of a linear relationship between two variables i.e. age and cholesterol of a human. This value always lies between −1 and +1. The obtained value i.e. 0.972834634 indicated that there is a good relationship between age and cholesterol level.
R2: It is the coefficient of determination i.e. the goodness of fit. The obtained value is 0.946407225 which indicates that 95% of the values of the heart disease dataset fit the regression model.
Adjusted R2: This variable is an upgraded version of R2. This value tries to adjust the predictor number in the model. This value increases when any new term improves the performance of the model more than the expectation and viceversa. The obtained value i.e. 0.945430663 indicates that the model is not performing well so there is a need for modification in predictor number.
Standard Error: It measures the precision of the regression model, the smaller the number, the more accurate the results are. The value obtained is 12.7814549 which indicates that the results are near to accurate value. The Standard Error depicts the measure of how well the data has been approximated.
Table 1.1 Regression statistics.
| Regression Statistics | |
| Multiple R | 0.972834634 |
| R Square | 0.946407225 |
| Adjusted R Square | 0.945430663 |
| Standard Error | 12.7814549 |
| Observations | 1,025 |
1.4.1 Logistic Regression
Logistic Regression is a statistical model used for identifying the probability of a class with the help of binary dependent variables i.e. Yes or No. It indicates whether a class belongs to the Yes category or the No category. For example, after executing an event on an object the results maybe Win or Loss, Pass or Fail, Accept or Not-Accept, etc. The mathematical representation of the Logistic Regression model is done by two indicator variables i.e. 0 and 1. It is different from the Linear Regression technique as depicted in Ref. [54]. As logistic regression has its importance in the real-life classification problems as depicted in Refs. [55, 56], different fields like Medical Sciences, Social Sciences, ML are using this model in their various field of operations.
The Logistic Regression is performed on the heart disease dataset [41]. The Receiver Operating Characteristics (ROC) is calculated that is based on the true positive rate that is plotted on the y-axis and the false positive rate that is plotted on the x-axis. After performing the logistic regression in python (Google Colab), the outcome is represented in Figure 1.11 and Table 1.2. Figure 1.11 represents the ROC curve and Table 1.2 represents the Area under the ROC Curve (AUC).
At the time of processing, the AUC value obtained (Table 1.2) on training data is 0.8374022, but when the data is processed for testing then the obtained result is outstanding (i.e. 0.9409523). This indicates that the model is more than 90% efficient for classification. In the next section, the difference between Linear and Logistic Regression is discussed.
Figure 1.11 ROC curve for logistic regression.
Table 1.2 AUC: Logistic regression.
| Parameter | Data | Value | Result |
| The area under | Training Data | 0.8374022 | Excellent |
| the ROC Curve (AUC) | Test Data | 0.9409523 |
|