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test use copper compounds, and a reducing sugar produces a red precipitate with either test. These simple organic qualitative tests find some use in the biochemical tests we describe in Chapters 14 and 15, later in this book.

Chemical structures of acetals, hemiacetals, hemiketals, and ketals.

      FIGURE 3-6: Acetals, hemiacetals, hemiketals, and ketals.

      Carboxylic acids

      Carboxylic acids, along with phosphoric acid, are the most important biological acids. Carboxylic acids react with bases such as the amines to produce salts. The salts contain an ammonium ion from the amine and a carboxylate ion from the acid.

      Carboxylic acids combine with alcohols to form esters and can indirectly combine with amines to form amides. Hydrolysis of an ester or an amide breaks the bond and inserts water. An acid, base, or enzyme is needed to catalyze hydrolysis. Under acidic conditions, you can isolate the acid and either the alcohol or the ammonium ion from the amine. Under basic conditions, you can isolate the carboxylate ion and either the alcohol or the amine.

      Thiols and amines

      Under mild oxidation, two thiols join to form a disulfide. Mild reducing conditions, catalyzed by enzymes or through the use of certain reducing agents, reverse this process. Such formation of disulfide linkages is important in the chemistry of many proteins, such as insulin.

      

Amines are the most important biological bases. As bases, they can react with acids. The behavior is related to the behavior of ammonia.

       

       

       

       

      

Many medications have amine groups. Converting many of these amines to ammonium ions makes them more readily soluble in biological systems (mostly water). For example, the reaction of a medication with hydrochloric acid forms the chloride, which often appears on the label as the hydrochloride.

      It’s possible to replace all the hydrogen atoms from an ammonium ion, math, to produce a quaternary ammonium ion, math.

      Phosphoric acid

      pH and functional groups

Functional Group Acid, Base, or Neutral Weakness Level
Monophosphate esters and diphosphate esters Acid Medium
Carboxylic acids Acid Weak
Phenols Acid Very weak
Thiols Acid Very weak
Amine salts Acid Very weak
Amines Base Weak
Carboxylate ions Base Very weak
Alcohols Neutral
Carboxylate esters Neutral
Ethers Neutral
Triphosphate esters Neutral
Thioethers Neutral
Disulfides Neutral
Amides Neutral
Ketones Neutral
Aldehydes Neutral

      

Isomers are compounds that have the same molecular formula but different structural formulas. (It’s all in how things are put together.) Some organic and biochemical compounds may exist in different isomeric forms. Many times, especially in biological systems, these different isomers have different properties. The two most common types of isomers in biological systems are cis-trans isomers and isomerism due

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