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an opposite association was obtained with synthetically methylated agar and revealing that synthetic methylation takes place at random sites in agar compared to its counterparts which naturally occurs at O6 of galactose and/or O2 of 3,6anhydrogalactose in agar.

Schematic illustration of the chemical construct of different agarose units.

      Figure 5.2 Chemical construct of different agarose units [20].

      Commercially prepared agar seems to have molecular weight ranging from 35.7 to 144 kD. In sequential solvent extraction method, the molecular weight of agar doesn’t appear to determine its differential solubility. Like the other polymers, the solubility of agar depends upon its nature of solvent, like if solvent is capable of distorting its helices and conformations, it will likely disturb the gelling process of agar. If the aggregation and helical confirmation of agar (mixed with ethanol and water) is melted, the solubility of agar shows its affinity for different proportions of ethanol, as well as it also reflects the aggregation and strength of polysaccharides in different concentration of ethanol. The higher concentrations of methoxyl and 3,6-anhydrogalactose elevate the hydrophobicity in agar, therefore alleviate their solubility in 40–80% of ethanol–water solution at high temperature. In conclusion, agar substituted by 3,6-anhydrogalactose and/or by any electrically charged groups, has elevated hydrophobic property with their associated solubility in polar solvents at lesser temperatures. However these solvents are highly diluted with water. Therefore it is really important to precisely understand the defined chemical structure of agar, to better understand not only the physico-chemistry of the agar molecule but also the other related polysaccharide molecules.

      Ever since, Araki discovered the fundamental structure of agar and agarose, in 1966, so many alternative forms of this basic structure of agar, have been proposed by scientists. 4,6-O-(1-carboxyethylidene)-D-galactose, an acetal group of pyruvic acid of agar extracted from G. amansii, was discovered by Hirase 1957. Later it was also found in Gracilaria agar by Duckworth and his team. On the other hand Rees discovered in 1961 that L-galactose 6-sulfate works as a precursor of 3,6-anhydogalactose.

      Hirase in 1957 [21], Araki and Peat in 1961 described the functions and the physicochemical properties of some of the methylated galactose units like, 6-O-methyl-D-galactose and 4-O-methyl-L-galactose, L-galactose, methyl-pentose, and xylose, even though the precise site of methyl-pentose is still unidentified. Craigie, Jurgens and Karamanos in 1989 stated that 4-O-methyl-L-galactose works as a subdivision on galactose in polymer chains.

      Except the biological precursor, mostly innate chemical alterations take place on those sites that don’t upset the helical conformation of the polysaccharides. These sites are O6 and O4 of galactose and O2 of 3,6-anhydrogalactose. Conversely these natural chemical modifications may disturb the aggregation of helices, which will result in disturbance in gelation.

      Agar gelation is the primary application of agar and agarose and there a number of factors that disturb it, here we will try to cover them. To elevate the agar gel strength, in 1946, Yanagawa alkali treated the agar to convert L-galactose 6-sulfate into 3,6-anhydrogalactose and Rees used sulfate alkyl-transferase in algae and succeeded. This chemical reaction affects the rheological characteristics of agar and can be understand with respect to the so-called gel network theory coined and studied during the period of 1969–1982 [23–27].

      Factors that affect the physico-chemical properties of algae, also affect the synthesis of agar as well as its yield. A number of authors have studied the seasonal quality of agar and published the researched data.

      Multiple fractionation patterns, using anion-exchange chromatography, were discovered by Ji et al. in 1985. He observed multiple 6-O-methyl-D-galactose fractions in Gracilaria verrucosa agar of North and South China. The differences in patterns must be due to the different origin sites of agar, still genetic dissimilarity could not be taken away. Rees and Conway studied correlation of 3,6-anhydro-galactose fractions in Porphyra agars with environmental conditions.

      In G. tikvahiae, the quality of the agar is inversely related with its age. According to Craigie and Wen, younger tissues of agar have higher content of 3,6-anhydrogalactose, however old tissues have more methyl and sulfate contents in them. The young and old tissues of Gracilaria pseudoverrucosa during growing and non-growing seasons with respect to the changes in chemical structure and agar distribution throughout the algae, was studied by Lahaye and Yaphe in 1988. They stated that chemical structure of agar changes with the algal age, and called it “secondarization” of algal cell-wall. Precursor-repeating units are higher in the polysaccharides of younger or ‘primary’ cell wall of algae. This affects the physico-chemical properties of agar gel i.e.: enrichment of precursor-repeating units leads to decrease in limitation in elongation of dividing cell and actively growing tissues. However, when algal tissue gets old, fewer cell division occurs and cell wall thickens and gets flexible to stabilize the algal skeleton. When agar polysaccharide is synthesized and/or substituted with chemical groups, or make cross-links with it, it increases the rigidity and cohesiveness of the older cell wall

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