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property is known as fluorescence. The amount of light emitted (the number of photons) is proportional to the amount of fluorochrome bound to the cell. The mean fluorescence intensity of a population indicates the strength of expression of the relevant antigen. The emitted light passes through dichroic mirrors, that is, mirrors that reflect some wavelengths and transmit others, so that it is possible, for example, to reflect SSC for measurement and transmit fluorescence signals to another detector such as a photomultiplier tube (Figure 1.1). The detector produces an electrical signal that is proportional to the amount of incident light. Some commonly used fluorochromes are shown in Table 1.1.

      The cells that are studied must be dispersed. For peripheral blood and bone marrow aspirate specimens, it is necessary to exclude mature and immature red cells. This is most simply done by lysing red cells using an ammonium chloride solution. Otherwise red cells and their precursors will appear in scatter plots and interfere with gating leucocyte populations of interest. If assessment of immunoglobulin expression is required, there must also be a washing step to remove the plasma that contains immunoglobulin, which would neutralise the monoclonal lambda‐ or kappa‐specific antibody.

Table 1.1 Commonly used fluorochromes.

Fluorescein isothiocyanate (FITC)

Phycoerythrin (PE)

Allophycocyanine (APC)

Peridinin chlorophyll (PerCP)

Cyanine 5 (Cy5), cyanine 5.5 (Cy5.5) and cyanine 7 (Cy7)

Texas red

Pacific blue

Brilliant violet

Krome orange

Alexa Fluor 488 (AF488)

Alexa Fluor 647 (AF647)

Phycoerythrin‐Texas Red X (ECD)

Phycoerythrin‐cyanine 5 (PE‐Cy5)

Phycoerythrin‐cyanine 5.5 (PE‐Cy5.5)

Phycoerythrin‐cyanine 7 (PE‐Cy7)

The great majority of monoclonal antibodies used in immunophenotyping have been characterised at a series of international workshops and those with the same specificity have been assigned a cluster of differentiation (CD) number. This number can be used to refer to both the antibody and the antigen it recognises. There are now more than 350 specificities recognised so that a careful selection of antibodies for diagnostic use is important. In addition to fluorochromes conjugated to monoclonal or polyclonal antibodies, it is also possible to use either fluorochromes that can bind directly to cellular constituents, such as DNA, or labelled modified aerolysins that bind to membrane glycosylphosphatidylinositol glycan A (GPI) (used in the diagnosis of paroxysmal nocturnal haemoglobinuria). Propidium iodide binding can be used to identify non‐viable cells and exclude them from analysis. Monoclonal antibodies that are most used in flow cytometric immunophenotyping are detailed in Part 2.

      Results of immunophenotyping are usually shown as a two‐dimensional plot in which FSC, SSC and the expression of certain antigens are plotted against each other, permitting the recognition of the probable nature of a cell cluster in a particular position. It is thus possible to gate on a cellular population of interest. A gate is an electronic boundary; it can either be predetermined or drawn by the operator. There are four commonly used approaches to gating of target populations: FSC versus SSC, CD45 versus SSC, CD19 versus SSC and CD34 versus SSC.

FSC versus SSC is a useful way of screening a specimen to identify normal populations and to highlight abnormal cells as illustrated in Figure 1.2.

      Forward scatter is increased in relation to increasing cell size whilst SSC is influenced by cytoplasmic granularity and nuclear complexity. It is a useful means of gating on blasts when CD34 is not expressed, for example in monoblastic leukaemias. Such plots are helpful in identifying large activated lymphocytes, an excess of small lymphocytes or monocytes and even the presence of hairy cells (see Chapter 3). Granular blasts show increased SSC and this is reflected in a shift to the right in the scatter plot. This can be an early indication of a possible acute promyelocytic leukaemia.

Figure 1.2 Delineation of peripheral blood leucocyte populations using forward scatter (FSC) and side scatter (SSC) characteristics.

Figure 1.3 Delineation of peripheral blood or bone marrow leucocyte populations using CD45 expression and SSC.

A plot of CD45 expression and SSC is not only useful for separating normal cell populations but also helps identify precursor cell populations, which frequently show only weak CD45 expression (Figure 1.3).

CD19 versus SSC (Figure 1.4) and CD34 versus SSC (Figure 1.5) plots are useful for isolating B cells and blast cells, respectively.

Back gating is a process whereby a target population identified in one approach can be tracked in another. For example, CD34+ myeloblasts can be isolated using CD34 versus SSC, then colour tracked into the FSC versus SSC plot to show cell size and granularity. With modern multichannel instruments it is possible to study 6–8 or more antigens in a single tube. If multiple tubes are studied, several core antibody‐fluorochrome conjugates can be included in each tube analysed so that cross‐comparison between the same cells stained with different antibody panels in different tubes is possible.

Figure 1.4 Delineation of peripheral blood or bone marrow B‐cell populations using CD19 expression and SSC.

Figure 1.5 Delineation of peripheral blood or bone marrow CD34+ blast populations using CD34 expression and SSC.

Flow cytometric immunophenotyping is used particularly in the investigation of haematological neoplasms, but there are other roles (Table 1.2).

Following analysis, the immunophenotyping laboratory will issue a report detailing the characteristics of any abnormal population identified and offering an interpretation. The strength of expression of any antigen is also of relevance. This may be expressed as

Table 1.2 Role of flow cytometric immunophenotyping.

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